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Liste des publications

• Biochimie analytique
• Bioinformatique
• Imagerie cellulaire
• Collections

Biochimie analytique

2023

• Martina Zapletalová, Corinne Rancurel, Benoit Industri, Marc Bardin, Kevin Le Brigand, Philippe Nicot, Virginie Magnone,
• ^#, Corinne Rancurel ^# ,,, Marie Gislard, Anais Loisier, Claire Kuchly,, Etienne GJ Danchin, Cyril Van Ghelder. [ ^# equal contribution ]. (2023). Genome sequence and annotation of Periconia digitata, a promising biocontrol agent of phytopathogenic oomycetes. Preprint: bioRxiv. p. 2023.03.17.533154. doi:10.1101/2023.03.17.533154

2017

• Castella C, Mirtziou I,, Boscari A, Montrichard F, Papadopoulou K, Rouhier N, Puppo A, Brouquisse R. Post-translational modifications of Medicago truncatula glutathione peroxidase 1 induced by nitric oxide. Nitric Oxide. 2017 Aug 1;68:125-136. doi: 10.1016/j.niox.2017.02.004

2016

• Rodiuc N, Barlet X, Hok S, Perfus-Barbeoch L, Allasia V, Engler G,, Marteu N, de Almeida-Engler J, Panabières F, Abad P, Kemmerling B, Marco Y, Favery B, Keller H. Evolutionarily distant pathogens require the Arabidopsis phytosulfokine signalling pathway to establish disease. Plant Cell Environ. 2016 Jul;39(7):1396-407. doi: 0.1111/pce.12627. 
• Han P, Desneux N, Michel T, Le Bot J,, Wajnberg E, Amiens-Desneux E, Lavoir AV. Does Plant Cultivar Difference Modify the Bottom-Up Effects of Resource Limitation on Plant-Insect Herbivore Interactions? J Chem Ecol. 2016 Dec;42(12):1293-1303. 
• Han P, Wang ZJ, Lavoir AV, Michel T,, Zheng WY, Niu CY, Desneux N. Increased water salinity applied to tomato plants accelerates the development of the leaf miner Tuta absoluta through bottom-up effects. Sci Rep. 2016 Sep 13;6:32403. doi: 10.1038/srep32403.

2014

• Larousse M, Govetto B,, Etienne C, Industri B, Theodorakopoulos N, Deleury E, Ponchet M, Panabières F, Galiana E. Characterization of PPMUCL1/2/3, three members of a new oomycete-specific mucin-like protein family residing in Phytophthora parasitica biofilm. Protist. 2014 May;165(3):275-92. doi: 10.1016/j.protis.2014.03.003. 

Avant 2014

• Baron OL, van West P, Industri B,, Dubreuil G, Gourbal B, Reichhart JM, Coustau C. Parental transfer of the antimicrobial protein LBP/BPI protects Biomphalaria glabrata eggs against oomycete infections. PLoS Pathog. 2013;9(12):e1003792. doi: 10.1371/journal.ppat.1003792. 
• Bidet M, Tomico A, Martin P, Guizouarn H, Mollat P, Mus-Veteau I. The Hedgehog receptor patched functions in multidrug transport and chemotherapy resistance. Mol Cancer Res. 2012 Nov;10(11):1496-508. doi: 10.1158/1541-7786.MCR-11-0578. 
• Bidet M, Joubert O, Lacombe B, Ciantar M, Nehmé R, Mollat P, Brétillon L, Faure H, Bittman R, Ruat M, Mus-Veteau I. The hedgehog receptor patched is involved in cholesterol transport. PLoS One. 2011;6(9):e23834. doi: 10.1371/journal.pone.0023834. 
• Hovers J, Potschies M, Polidori A, Pucci B, Raynal S, Bonneté F, Serrano-Vega MJ, Tate CG, Picot D, Pierre Y, Popot JL, Nehmé R, Bidet M, Mus-Veteau I, Busskamp H, Jung KH, Marx A, Timmins PA, Welte W. A class of mild surfactants that keep integral membrane proteins water-soluble for functional studies and crystallization. Mol Membr Biol. 2011 Apr;28(3):171-81. doi: 10.3109/09687688.2011.552440. 
• Nehmé R, Joubert O, Bidet M, Lacombe B, Polidori A, Pucci B, Mus-Veteau I. Stability study of the human G-protein coupled receptor, Smoothened. Biochim Biophys Acta. 2010 Jun;1798(6):1100-10. doi: 10.1016/j.bbamem.2010.02.015. 
• Joubert O, Nehmé R, Fleury D, De Rivoyre M, Bidet M, Polidori A, Ruat M, Pucci B, Mollat P, Mus-Veteau I. Functional studies of membrane-bound and purified human Hedgehog receptor Patched expressed in yeast. Biochim Biophys Acta. 2009 Sep;1788(9):1813-21. doi: 10.1016/j.bbamem.2009.05.009. 

Communications par affiche

• Characterization of proteins involved in plant defense responses by an LC-MS/MS approach for phytohormone quantification. V. Allasia,, H. Keller,(Septembre 2019, SMAP, Strasbourg)
• Regulation of the Medicago truncatula glutathione peroxidase 1 (MtGPX1) activity by NO. Analysis of post-translational modifications by biotin-switch and mass spectrometry approaches. Claude Castella, Ioanna Mirtziou, , Aurelie Fournol, Alexandre Boscari, Françoise Montrichard, Alain Puppo,Kalliopi Papadopoulou and Renaud Brouquisse (September 2016, 6th Plant NO International Meeting, Granada. Spain)
• Intérêt des approches protéomique et métabolomique pour la caractérisation de la résistance induite chez la tomate., V. Pleskova, Z. Storkova, B. Industri,(Janvier 2014, JJC, Aussois)
• Deciphering tomato defense after induction of resistance towards a biotrophic, an hemibiotrophic and a necrotrophic pathogen, Hejer Daoulatli, Veronika Pleskova, Zuzana Storkova, Benoit Industri, Catherine Mura, Eric Galiana,, Emeline Deleury, Philippe Nicot, Marc Bardin,(Avril 2013, IOBC, Avignon)

Communications orales

• Identification of proteins involved in plant defenses mechanisms by an LC-MS/MS approach of phytohormones quantification. V. Allasia,, , H. Keller. (juin 2019, 9ème journée ProtéoPACA, Marseille)
• LC-MS/MS identification and quantification of phytohormones involved in plant defense mechanisms. V. Allasia,, H. Keller,, . (juin 2019, 2ème journée MétaSUD, Toulon)
• La spectrométrie de masse. (Ecole Chercheurs Massprot’INRA, 2017, Cannes)

Brevet

• FR 1000193070: Pages G., Grépin R., Anti-CXCL1, CXCL7 and CXCL8 antibodies and their applications (2013)

Bioinformatique

2023

• Ana Paula Zotta Mota, Georgios D Koutsovoulos, Laetitia Perfus-Barbeoch, Evelin Despot-Slade, Karine Labadie, Jean-Marc Aury, Karine Robbe-Sermesant, Marc Bailly-Bechet, Caroline Belser,, , Djampa K Kozlowski, Rahim Hassanaly-Goulamhoussen, , Benjamin Noel, Nevenka Mestrovic-Radan, Patrick Wincker, . (2023). Unzipped assemblies of polyploid root-knot nematode genomes reveal new kinds of unilateral composite telomeric repeats. Preprint bioRxiv. p. 2023.03.29.534350. doi:10.1101/2023.03.29.534350
• Elena Bovio ^#, ^#, Aurelie Seassau, Marc Magliano, Marie Gislard, Anais Loisier, Claire Kuchly, Michel Ponchet,, Cyril Van Ghelder. [ ^# equal contribution ]. (2023). Genome sequence and annotation of Periconia digitata, a promising biocontrol agent of phytopathogenic oomycetes. Preprint bioRxiv. p. 2023.03.17.533154. doi:10.1101/2023.03.17.533154

2022

• Yara Noureddine, Joffrey Mejias,, Sébastien Thomine, Michaël Quentin, Pierre Abad, Bruno Favery, Stéphanie Jaubert-Possamai. (2022). Copper microRNAs modulate the formation of giant feeding cells induced by the root knot nematode Meloidogyne incognita in Arabidopsis thaliana. New Phytol. 236: 283-295. :10.1111/nph.18362
• Koutsovoulos Georgios D., Granjeon Noriot Solène, Bailly-Bechet Marc,,. (2022). AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers. PLOS Computational Biology. 18(11):e1010686 doi:10.1371/journal.pcbi.1010686
• Carole Belliardo, Georgios D. Koutsovoulos,, Mathilde Clément, Justine Lipuma, Marc Bailly-Bechet,. (2022). Improvement of eukaryotic protein predictions from soil metagenomes. Sci Data. 9, 311. doi:10.1038/s41597-022-01420-4
• Marwa Roumani, Jacques Le Bot, Michel Boisbrun, Florent Magot,, Christophe Robin, Frédérique Hilliou, Romain Larbat. (2022). Transcriptomics and Metabolomics Analyses Reveal High Induction of the Phenolamide Pathway in Tomato Plants Attacked by the Leafminer Tuta Absoluta. Metabolites. 12(6):484. doi:10.3390/metabo12060484

2021

• Hassanaly-Goulamhoussen Rahim, de Carvalho Augusto Ronaldo, Marteu-Garello Nathalie,, Favery Bruno,,, Abad Pierre, Grunau Christoph, Perfus-Barbeoch Laetitia. (2021). Chromatin Landscape Dynamics in the Early Development of the Plant Parasitic Nematode Meloidogyne incognita. Frontiers In Cell And Developmental Biology. 9(765690), 18p. doi:10.3389/fcell.2021.765690
• Mei X, Wang Y, Li Z, Larousse M,,, Zhan F, He Y, Pu L, Panabières F, Zu Y. (2021). Root-associated microbiota drive phytoremediation strategies to lead of Sonchus Asper (L.) Hill as revealed by intercropping-induced modifications of the rhizosphere microbiome. Environ Sci Pollut Res. doi:10.1007/s11356-021-17353-1
•  ^#,  Bournaud C ^#, Dazenière J, Thorpe P, Bailly-Bechet M, Pellegrin C,, Grynberg P, Perfus-Barbeoch L, Eves-van den Akker S,. [ ^# equal contribution ]. (2021). Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes. Genes. 2021; 12(5):771. doi:10.3390/genes12050771
• Kozlowski DKL , Hassanaly-Goulamhoussen R,, Koutsovoulos GD, Bailly-Bechet M,. (2021). Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest. Evolutionary Applications. Recommended in PCI Evolutionary Biology. 2020. doi:10.1111/eva.13246
• Chie Kodera, Jérémy Just,, Antoine Larrieu, Lucie Riglet, Jonathan Legrand, Frédérique Rozier, Thierry Gaude, Isabelle Fobis-Loisy. (2021). The molecular signatures of compatible and incompatible pollination in Arabidopsis. bioRxiv July 29, 2018. doi:10.1101/374843; published in BMC Genomics  22, 268 (2021). doi:10.1186/s12864-021-07503-7

2020

• Grynberg, P.; Coiti Togawa, R.; Dias de Freitas, L.; Antonino, J.D.; ; Mota do Carmo Costa, M.; Grossi-de-Sa, M.F.; Miller, R.N.G.; Brasileiro, A.C.M.; Messenberg Guimaraes, P.;. (2020). Comparative Genomics Reveals Novel Target Genes towards Specific Control of Plant-Parasitic Nematodes. Genes 2020, 11, 1347. doi:10.3390/genes11111347
• Koutsovoulos G.D., Poullet M., El Ashry A., Kozlowski D.K., Sallet E., , Martin-Jimenez C., Perfus-Barbeoch L., Frey J-E, Ahrens C., Kiewnick S.*,* [ * co-last authors ]. (2020). The polyploid genome of the mitotic parthenogenetic root knot nematode Meloidogyne enterolobii.  bioRxiv. March 23, 2019. doi:10.1101/586818v1;  published in Sci Data 7, 324 (2020). doi:10.1038/s41597-020-00666-0
• Bassani, I.,, Pagnotta, S., Orange, F., Pons, N., Lebrigand, K., Panabières, F., Counillon, L., Noblin, X., Galiana, E. (2020). Transcriptomic and Ultrastructural Signatures of K⁺-Induced Aggregation in Phytophthora parasitica Zoospores. Microorganisms 2020, 8, 1012. doi:10.3390/microorganisms8071012
• Panabières Franck,,, Kuhn Marie-Line. (2020). Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica. Frontiers in Genetics. June 2020;Volume 11;Article 557. doi:10.3389/fgene.2020.00557

2019

• Schiffer, P.H.,, Burnell, A.M., Creevey, C.J., Wong, S., Dix,I., O’Mahony, G., Culleton, B.A.,, Stier, G., Martínez-Salazar, E.A., Marconi, A., Trivedi,U., Kroiher, M., Thorne, M.A.S., Schierenberg, E., Wiehe, T., Blaxter, M. (2019). Signatures of the evolution ofparthenogenesis and cryptobiosis in the genomes of panagrolaimid nematodes. ISCIENCE (2019); Oct,21. doi:10.1016/j.isci.2019.10.039
• Marmonier A, Perfus-Barbeoch L,, Boissinot S, Favery B, Demangeat G, Brault V. (2019). In Vitro Acquisition of Specific Small Interfering RNAs Inhibits the Expression of Some Target Genes in the Plant Ectoparasite Xiphinema index. Int J Mol Sci. Jul 3;20(13). doi: 10.3390/ijms20133266
• Castagnone-Sereno P, Mulet K,, Koutsovoulos GD, Karaulic M,, Bailly-Bechet M, Pratx L, Perfus-Barbeoch L, Abad P. (2019). Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode Meloidogyne incognita. Mol Ecol May;28(10):2559-2572. doi:10.1111/mec.15095

2018

• Medina, C.^#,^#, Magliano, M., Raptopoulo, A., Marteu, N., Lebrigand, K., Abad, P., Favery, B., and Jaubert-Possamai, S. [  ^# equal contribution ]. (2018). Characterization of siRNAs clusters in Arabidopsis thaliana galls induced by the root-knot nematode Meloidogyne incognita. BMC Genomics 19, 943. doi:10.1186/s12864-018-5296-3
• Pratx L,,,, Castagnone-Sereno P, Abad P, Perfus-Barbeoch L. (2018). Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. BMC Genomics May 3;19(1):321. doi:10.1186/s12864-018-4686-x
• Ludovic Cottret, Martial Briand,, Sébastien Carrere. (2018). Family-Companion: analyse, visualise, browse, query and share your homology clusters. bioRxiv 266742 Feb 18; doi: 10.1101/266742

2017

• Agnel, S.,, and Robichon, A. (2017). Transcriptome Profiling of Neurosensory Perception Genes in Wing Tissue of Two Evolutionary Distant Insect Orders: Diptera (Drosophila melanogaster) and Hemiptera (Acyrthosiphon pisum). J Mol Evol 85, 234–245. doi:10.1007/s00239-017-9814-8
• , Laetitia Perfus-Barbeoch,, Peter Thorpe,, Simon Bajew, Roy Neilson, Elena Sokolova (Guzeeva), Corinne Da Silva, Julie Guy, Karine Labadie, Daniel Esmenjaud, Johannes Helder, John T. Jones and Sebastian Eves-van den Akker (2017). The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes. Genes (Basel). 8(10): 287. doi:10.3390/genes8100287
• Nguyen CN, Perfus-Barbeoch L, Quentin M, Zhao J, Magliano M, Marteu N,, Nottet N, Abad P, Favery B. (2017). A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism. New Phytol. 2017 Oct 16. doi:10.1111/nph.14837.
• , Ludovic Legrand and. (2017). Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life. Genes 2017, 8(10), 248; doi:10.3390/genes8100248.
• Medina C,, Magliano M, Ratpopoulo A, Revel B, Marteu N, Magnone V, Lebrigand K, Cabrera J, Barcala M, Silva AC, Millar A, Escobar C, Abad P, Favery B, Jaubert-Possamai S. (2017). Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita. New Phytol. 2017 Sep 14. doi:10.1111/nph.14717.
• Blanc-Mathieu R, Perfus-Barbeoch L, Aury JM,, Gouzy J, Sallet E, Martin-Jimenez C, Bailly-Bechet M, Castagnone-Sereno P, Flot JF, Kozlowski DK, Cazareth J, Couloux A, Da Silva C, Guy J, Kim-Jo YJ,, Schiex T, Abad P, Wincker P,. (2017). Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. PLOS Genetics 13, e1006777. doi:10.1371/journal.pgen.1006777
• Marie Larousse,, Camille Syska, Ferran Palero, Catherine Etienne, Benoît Industri, Xavier Nesme, Marc Bardin and Eric Galiana. (2017). Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5:56 doi:10.1186/s40168-017-0273-7

2016

• Romain Blanc-Mathieu, Laetitia Perfus-Babeoch, Jean-Marc Aury,, Jerome Gouzy, Erika Sallet, Cristina Martin-Jimenez, Philippe Castagnone-Sereno, Jean-Francois Flot, Djampa Kozlowski, Julie Cazareth, Arnaud Couloux, Corinne Da Silva, Julie Guy,, Thomas Schiex, Pierre Abad, Patrick Wincker, (2016). Peculiar hybrid genomes of devastating plant pests promote plasticity in the absence of sex and meiosis. bioRxiv 046805. 2016. doi:10.1101/046805
• Marine Pratlong, , Pierre Pontarotti and Didier Aurelle (2016) Monophyly of Anthozoa (Cnidaria): why do nuclear and mitochondrial phylogenies disagree? Zoologica Scripta 46(3),pages 363–371, May 2017;  First published : September 2016. doi:10.1111/zsc.12208
• Damiani I., Drain A., Guichard M., Balzergue S., Boscari A., Boyer J-C, Brunaud V., Cottaz S.,,, Fizames C., Fort S., Gaillard I.,, Maillol V., Rouached H., Samain E., Su Y-H, Thouin J., Touraine B., Puppo A., Frachisse J-M, Pauly N., Sentenac H. (2016). Nod factor effects on root hair-specific transcriptome of Medicago truncatula: focus on plasma membrane transport systems and reactive oxygen species networks. Frontiers in Plant Science. doi:10.3389/fpls.2016.00794
• Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ,,,, Holroyd NE, Cotton JA, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe MO, Boyes I, Marvin JM, Jones LM, Yusup HB, Lafond-Lapalme J, Esquibet M, Sabeh M, Rott M, Overmars H, Finkers-Tomczak A, Smant G, Koutsovoulos G, Blok V, Mantelin S, Cock PJ, Phillips W, Henrissat B, Urwin PE, Blaxter M, Jones JT. (2016). The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology 17, 124. doi:10.1186/s13059-016-0985-1

2014

• Eves-van den Akker S., Lilley C.,,, Cock P., Urwin P., Jones J.T. (2014). The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biol. Evol. doi:10.1093/gbe/evu171
• Pasquier, C., Clément, M., Dombrovsky, A., Penaud, S.,,, Ledger, N., Capovilla, M., and Robichon, A. (2014). Environmentally Selected Aphid Variants in Clonality Context Display Differential Patterns of Methylation in the Genome. PLoS ONE 9, e115022. doi:10.1371/journal.pone.0115022

Before 2014

• Flot, J.-F., Hespeels, B., Li, X., Noel, B., Arkhipova, I.,, Hejnol, A., Henrissat, B., Koszul, R., Aury, J.-M., et al. (2013). Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. doi: 10.1038/nature12326
• , Arguel, M.-J., Campan-Fournier, A., Perfus-Barbeoch, L., Magliano, M., Rosso, M.-N.,, Da Silva, C., Nottet, N., Labadie, K., et al. (2013). Identification of Novel Target Genes for Safer and More Specific Control of Root-Knot Nematodes from a Pan-Genome Mining. PLoS Pathog 9, e1003745. doi: 10.1371/journal.ppat.1003745
• Jaouannet M, Perfus-Barbeoch L, Deleury E, Magliano M,Vieira P,,, Coquillard P, Abad P, Rosso MN. (2012). A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei. New Phytol. Jun;194(4):924-31.
• Paganini J, Campan-Fournier A,, Gouret P, Pontarotti P, Wajnberg E, Abad P,. Contribution of Lateral Gene Transfers to the Genome Composition and Parasitic Ability of Root-Knot Nematodes. PLoS One (2012)

Communications par affiche

• Rancurel et al. (2014) Conference: ECCB 2014 : The 13th European Conference on Computational Biology
  Accepted Poster with Abstract F: Evolution and population genomics; F03: Alienness: Rapid detection of horizontal gene transfers in metazoan genomes
• Da Rocha al., (2012) Does a genome structure in divergent copies allow animal to evolve without sexual reproduction ? JOBIM 2012, poster 25.

Imagerie cellulaire

2020

• Yang Li, El Msehli Sarra, Benyamina Sofiane, Lambert Annie, Hopkins Julie, Cazareth Julie,, Hérouart Didier, Achi-Smiti Samira, Boncompagni Eric, Frendo Pierre ; Glutathione Deficiency in Sinorhizobium meliloti Does Not Impair Bacteroid Differentiation But Induces Early Senescence in the Interaction With Medicago truncatula  Front. Plant Sci., 03 March 2020 | https://doi.org/10.3389/fpls.2020.00137

2018

• Barbosa, E.A., Bonfim Junior, M.F., Bloch Jr., C., Rocha, T.L., Engler, G., and. (2018). Imaging mass spectrometry of endogenous polypeptides and secondary metabolites from galls induced by root-knot nematodes in tomato roots. MPMI. DOI: 10.1094/MPMI-02-18-0049-R

2017

• Junior, A. de S., Dijair, J., Pierre, O., Coelho, R.R., Grossi-de-Sa, M.F.,., and. (2017). Application of Nuclear Volume Measurements to Comprehend the Cell Cycle in Root-Knot Nematode-Induced Giant Cells. Front. Plant Sci. 8. DOI: 10.3389/fpls.2017.00961
• Ramos Coelho, R., Vieira, P., Antonino de Souza Júnior, J.D., Martin-Jimenez, C., De Veylder, L., Cazareth, J.,., Grossi-de-Sa, M.F., and. (2017). Exploiting cell cycle inhibitor genes of the KRP family to control root-knot nematode induced feeding sites in plants. Plant, Cell & Environment. Doi: 10.1111/pce.12912
• Ribeiro CW, Baldacci-Cresp F,, Larousse M, Benyamina S, Lambert A, Hopkins J, Castella C, Cazareth J, Alloing G, Boncompagni E, Couturier J, Mergaert P, Gamas P, Rouhier N, Montrichard F, Frendo P. Regulation of Differentiation of Nitrogen-Fixing Bacteria by Microsymbiont Targeting of Plant Thioredoxin s1 Curr Biol. 2017 Jan 23;27(2):250-256. doi: 10.1016/j.cub.2016.11.013. Epub 2016 Dec 22. PMID: 2801761

2016

• Díaz-Manzano, F.E., Barcala, M.,., Fenoll, C., de Almeida-Engler, J., and Escobar, C. (2016). A Reliable Protocol for In situ microRNAs Detection in Feeding Sites Induced by Root-Knot Nematodes. Front Plant Sci 7, 966. DOI: 10.3389/fpls.2016.00966
• Kyndt, T., Goverse, A., Haegeman, A., Warmerdam, S., Wanjau, C., Jahani, M.,., Engler, J. de A., and Gheysen, G. (2016). Redirection of auxin flow in Arabidopsis thaliana roots after infection by root-knot nematodes. J. Exp. Bot. erw230. DOI: 10.1093/jxb/erw230

2015

• Albuquerque ÉV, Bezerra CA, Romero JV, Valencia JW, Valencia-Jiménez A, Pimenta LM, Barbosa AE, Silva MC, Meneguim AM, Sá ME,, Fernandez D, Grossi-de-Sá MF (2015) Seed-Specific Stable Expression of the α-AI1 Inhibitor in Coffee Grains and the In Vivo Implications for the Development of the Coffee Berry Borer. Trop Plant Biol. 8:98-107
• Cabrera, J., Díaz-Manzano, F.E., Barcala, M., Arganda-Carreras, I., de Almeida-Engler, J.,., Fenoll, C., and Escobar, C. (2015) Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis. New Phytol. New Phytol. 206(2):868-80
• Engler, J. de A., Vieira, P., Rodiuc, N., Sa, M.F.G. de, and. (2015). The plant cell cycle machinery: usurped and modulated by plant-parasitic nematodes. Advances in Botanical Research 73, 91–118
• Lourenço-Tessutti IT, Souza Junior JD, Martins-de-Sa D, Viana AA, Carneiro RM, Togawa RC,, Batista JA, Silva MC, Fragoso RR, Grossi-de-Sa MF (2015) Knock-down of heat-shock protein 90 and isocitrate lyase gene expression reduced root-knot nematode reproduction. Phytopathology. 105(5):628-37
• Naessens E, Dubreuil G, Giordanengo P, Baron OL, Minet-Kebdani N, Keller H, Coustau C (2015) A Secreted MIF Cytokine Enables Aphid Feeding and Represses Plant Immune Responses. Curr Biol. 25(14):1898-903
• Paganelli L, Caillaud MC, Quentin M, Damiani I, Govetto B, Lecomte P, Karpov PA, Abad P, Chabouté ME,  Favery B (2015) Three BUB1 and BUBR1/MAD3-related spindle assembly checkpoint proteins are required for accurate mitosis in Arabidopsis.  New Phytol. 205(1):202-15
• Rodiuc, N., Barlet, X., Hok, S., Perfus-Barbeoch, L., Allasia, V.,., Séassau, A., Marteu, N., de Almeida-Engler, J., Panabières, F., et al. (2015). Evolutionarily distant pathogens require the Arabidopsis phytosulfokine signalling pathway to establish disease. Plant Cell Environ. DOI: 10.1111/pce.12627

2014

• Attard A, Evangelisti E, Kebdani-Minet N, Panabières F, Deleury E, Maggio C, Ponchet M, Gourgues M (2014) Transcriptome dynamics of Arabidopsis thaliana root penetration by the oomycete pathogen Phytophthora parasitica. BMC Genomics. 15:538
• Bernstein, A., Mangeon, A., Almeida-Engler, J.,., Montagu, M.V., Sachetto-Martins, G., and de Oliveira, D.E. (2014) Functional analysis of an auxin-inducible DNA-binding protein gene. Plant Signal Behav. 10(1):e977706
• Bezerra, C.A., Macedo, L.L.P., Amorim, T.M.L., Santos, V.O., Fragoso, R.R., Lucena, W.A., Meneguim, A.M., Valencia-Jimenez, A.,., Silva, M.C.M., et al. (2014). Molecular cloning and characterization of an α-amylase cDNA highly expressed in major feeding stages of the coffee berry borer, Hypothenemus hampei. Gene 553, 7–16. DOI: 10.1016/j.gene.2014.09.050
• Hopkins J,, Kazmierczak T, Gruber V, Frugier F, Clement M, Frendo P, Herouart D, Boncompagni E (2014). MtZR1, a PRAF protein, is involved in the development of roots and symbiotic root nodules in Medicago truncatula. Plant Cell Environ. 37(3):658-69
• Jezierska, A, Chaux, C, Pesquet, J-C, Talbot, H and(2014)  An EM Approach for Time-Variant Poisson-Gaussian Model Parameter Estimation. IEEE Transactions on signal processing. 62(1): 17-30
• Larousse M, Govetto B, Seassau A, Etienne C, Industri B, Theodorakopoulos N, Deleury E, Ponchet M, Panabieres F, Galiana E (2014) Characterization of PPMUCL1/2/3, three members of a new oomycete-specific mucin-like protein family residing in Phytophthora parasitica biofilm. Protist 165(3):275-92
• Lipuma J, Cinege G, Bodogai M, Oláh B, Kiers A, Endre G, Dupont L, Dusha I (2014)  A vapBC-type toxin-antitoxin module of Sinorhizobium meliloti influences symbiotic efficiency and nodule senescence of Medicago sativa. Environ. Microbiol. 16(12):3714-29
• , Hopkins J, Combier M, Baldacci F,Brouquisse R, Hérouart D, Boncompagni E (2014) Involvement of papain and legumain proteinase in the senescence process of Medicago truncatula nodules. New Phytol. 202(3): 849-63
• Ribeiro CW, Alloing G, Mandon K, Frendo P (2014) Redox regulation of differentiation in symbiotic nitrogen fixation. Biochim Biophys Acta. 1850(8):1469-78
• Vieira P, De Clercq A, Stals H, Van Leene J, Van De Slijke E, Van Isterdael G, Eeckhout D, Persiau G, Van Damme D, Verkest A, Antonino de Souza JD, Júnior, Glab N, Abad P,Inzé D, De Veylder L, De Jaeger G, Engler JD. (2014) The Cyclin-Dependent Kinase Inhibitor KRP6 Induces Mitosis and Impairs Cytokinesis in Giant Cells Induced by Plant-Parasitic Nematodes in Arabidopsis. Plant Cell 26(6):2633-2647

2013

• Andrio E, Marino D, Marmeys A, de Segonzac MD, Damiani I, Genre A, Huguet S, Frendo P, Puppo A, Pauly N. (2013) Hydrogen peroxide-regulated genes in the Medicago truncatula–Sinorhizobium meliloti symbiosis. New Phytol. 198:179-89
• Antonino de Souza Júnior JD, Ramos Coelho R, Tristan Lourenço I, da Rocha Fragoso R, Barbosa Viana AA, Lima Pepino de Macedo L, Mattar da Silva MC, Gomes Carneiro RM,, Grossi-de-Sa MF. (2013) Knocking-down Meloidogyne incognitaproteases by plant-delivered dsRNA has negative pleiotropic effect on nematode vigor . PLoS One. 8(12): e85364
• Baron OL, van West P, Industri B, Ponchet M, Dubreuil G, Gourbal B, Reichhart JM, Coustau C. (2013) Parental Transfer of the Antimicrobial Protein LBP/BPI Protects Biomphalaria glabrata Eggs against Oomycete Infections. PLoS Pathog. 9(12):e1003792
• Benyamina SM, Baldacci-Cresp F, Couturier J, Chibani K, Hopkins J, Bekki A, de Lajudie P, Rouhier N, Jacquot JP, Alloing G, Puppo A, Frendo P. (2013) Two Sinorhizobium meliloti glutaredoxins regulate iron metabolism and symbiotic bacteroid differentiation. Environ Microbiol. 15(3):795-810
• Evangelisti E, Govetto B, Minet-Kebdani N, Kuhn ML, Attard A, Ponchet M, Panabières F, Gourgues M. (2013) The Phytophthora parasitica RXLR effector penetration-specific effector 1 favours Arabidopsis thaliana infection by interfering with auxin physiology. New Phytol. 199(2):476-89
• Firmino AA, Fonseca FC, de Macedo LL, Coelho RR, Antonino de Souza JD Jr, Togawa RC, Silva-Junior OB, Pappas-Jr GJ, da Silva MC,, Grossi-de-Sa MF. (2013) Transcriptome Analysis in Cotton Boll Weevil (Anthonomus grandis) and RNA Interference in Insect Pests. PLoS One. 8(12):e85079
• Iberkleid I, Vieira P,, Firester K, Spiegel Y, Horowitz SB. (2013) Fatty acid-and retinol-binding protein, Mj-FAR-1 induces tomato host susceptibility to root-knot nematodes.PLoS One. 8(5): e64586
• Koch A, Kumar N, Weber L, Keller H, Imani J, et Kogel KH (2013). Host-induced gene silencing of cytochrome P450 lanosterol C14α-demethylase-encoding genes confers strong resistance to Fusarium species. Proc Natl Acad Sci U S A 110, 19324-19329
• Kyndt T, Vieira P, Gheysen G,. (2013) Nematode feeding sites: unique organs in plant roots. Planta. 238(5):807-18
• Pierre, O.,., Hopkins, J., Brau, F., Boncompagni, E., and Hérouart, D. (2013). Peribacteriod space acidification: a marker of mature bacteroid functioning in Medicago truncatula nodules. Plant Cell Environ. DOI: 10.1111/pce.12116
• Quentin M, Abad P, Favery B. (2013). Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells. Front Plant Sci.  4:53
• Vieira, P.,., and. (2013). Enhanced levels of plant cell cycle inhibitors hamper root-knot nematode-induced feeding site development. Plant Signal Behav. 8(12)
• Vieira P, Escudero C, Rodiuc N, Boruc J, Russinova E, Glab N, Mota M, De Veylder L, Abad P,,. (2013)  Ectopic expression of kip-related proteins restrains root-knot nematode-feeding site expansion.  New Phytol. 199 (2): 505-19

2012

• Ayers K, Mteirek R, Cervantes A, Lavenant-Staccini L, Thérond P and Gallet A. (2012) Dally and Notum regulate the switch between low and high level Hedgehog pathway signalling. Development. 139(17):3168-79
• Baldacci-Cresp F, Chang C, Maucourt M, Deborde C, Hopkins J, Lecomte P, Bernillon S, Brouquisse R, Moing A, Abad P, Hérouart D, Puppo A, Favery B, Frendo P. (2012) (Homo)glutathione deficiency impairs root-knot. nematode development in Medicago truncatula.PloS Pathog. 8(1):e1002471
• Cam Y,, Boncompagni E, Hérouart D, Meilhoc E, Bruand C. (2012) Nitric oxide (NO): a key player in the senescence of Medicago truncatula root nodules. New Phytol. 196(2):548-60
• Damiani I, Baldacci-Cresp F, Hopkins J, Andrio E, Balzergue S, Lecomte P, Puppo A, Abad P, Favery B, Hérouart D (2012) Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes. New Phytol. 194 (2) : 511-522
• , Kyndt T, Vieira P, Van Cappelle E, Boudolf V, Sanchez V, Escobar C, De Veylder L,, Abad P, Gheysen G. (2012) CCS52 and DEL1 genes are key components of the endocycle in nematode induced feeding sites. The Plant Journal. 72(2): 185-198
• Jaouannet, M., Perfus-Barbeoch, L., Deleury, E., Magliano, M.,., Vieira, P., Danchin, E.G.J., Da Rocha, M., Coquillard, P., Abad, P. and Rosso, MN.(2012) A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei. New Phytologist. 2012: 194: 924-931
• Ranieri N, Ruel ., Gallet A, Raisin-Tani and Thérond P(2012) Distinct Phosphorylations on Kinesin Costal-2 Mediate Differential Hedgehog Signaling Strength. Dev Cell. 22(2):279-94
• Schmitz A, Anselme C, Ravallec M, Rebuf C, Simon JC, Gatti JL, Poirié M. (2012). The cellular immune response of the pea aphid to foreign intrusion and symbiotic challenge. PLoS One. 7(7):e42114
• Thiebaut F, Rojas CA, Almeida KL, Grativol C, Domiciano GC, Lamb CR, Engler Jde A, Hemerly AS, Ferreira PC. (2012). Regulation of miR319 during cold stress in sugarcane. Plant Cell Environ. 35(3):502-12
• Vieira P, Banora MY, Castagnone-Sereno P, Rosso MN,,. (2012) An immunocytochemical procedure for protein localization in various nematode life stages combined with plant tissues using methylacrylate-embedded specimens. Phytopathology.102(10):990-6
• Vieira, P.,. and. (2012) Whole-mount confocal imaging of nuclei in giant feeding cells induced by root-knot nematodes in Arabidopsis. New Phytologist. 2012: 195(2): 488-496

Collections

• Muru D et al. (in prep) Survey of the diversity of Trichogramma species in France and neighbouring areas with information related to their host plants and habitats
• Warot S et al. (in prep) Insights into the molecular diversity and species delineation in the genus Trichogramma with a focus on West Palaearctic
• Dumbardon-Martial T et al. (in press) Inventaires des espèces du genre Trichogramma sur cucurbitacées cultivées et plantes associées en Martinique en vue du développement de méthodes de lutte biologique – Bulletin de la Société Entmologique de France
• Cruaud et al. (2018) Pushing the limits of whole genome amplification: successful sequencing of RADseq library from a single microhymenopteran (Chalcidoidea, Trichogramma). PeerJ 6:e5640; DOI 10.7717/peerj.5640
• Mougin et al. (2018) BRC4Env, a network of Biological Resource Centres for research in environmental and agricultural sciences - Environmental Science and Pollution Research doi: 10.1007/s11356-018-1973-7.
• Marchand A et al. (2017) Formalisation d’un Centre de ressources biologiques dédié aux parastoïdes oophages : CRB EP-Coll. Cahier des Techniques de l’INRA. Numéro spécial «  Entomologie Appliquée » : 48-57